Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
LAML rs11809417 chr1:221101596 A/G 0.000157 111 0 18.78 14.18 KM Plot
LAML rs11814264 chr10:134974570 G/C 4.34E-5 111 16.3 19.33 3 KM Plot
LAML rs11838461 chr13:100085742 G/A 1.23E-5 111 16.2 10.65 1.03 KM Plot
LAML rs11839996 chr13:100089664 C/A 5.58E-5 111 17.23 10.67 1.02 KM Plot
LAML rs11840658 chr13:100087455 T/C 5.58E-5 111 17.23 10.67 1.02 KM Plot
LAML rs11859284 chr16:66147573 C/G 6.52E-5 111 13.1 22.37 0 KM Plot
LAML rs12003965 chr9:138973102 C/T 0.000114 106 14.18 21.27 0 KM Plot
LAML rs12006463 chr9:138973080 T/G 0.000114 106 14.18 21.27 0 KM Plot
LAML rs12112286 chr7:46225028 G/T 3.6E-5 111 15.17 16.3 0 KM Plot
LAML rs12121476 chr1:9335327 C/G 7.82E-6 109 15.7 14.67 3 KM Plot
LAML rs12278050 chr11:133809032 C/T 2.01E-9 110 13.1 16.3 0.52 KM Plot
LAML rs12317168 chr12:29136045 G/A 4.12E-5 111 15.73 12.18 0 KM Plot
LAML rs12357633 chr10:957246 C/T 4.43E-5 110 15.23 14.63 5.1 KM Plot
LAML rs12361605 chr11:34297505 C/T 0.000118 111 13.2 16.3 0 KM Plot
LAML rs12364526 chr11:34295746 T/A 0.000118 111 13.2 16.3 0 KM Plot